Essentially it's the "non-perturbed" ensemble member. The initial conditions are tweaked in each ensemble members initialization scheme to account for potential uncertainty (this is the purpose for ensemble modeling). The "control run" is the non-perturbed ensemble member run w/ the same resolution, parameterizations, and internal physics as the rest of the ensemble members, which generally have a lower resolution than the operational deterministic version of the model (and often have more parameterizations than the operational runs as well).